Kinetic Data of Biomolecular Interactions
National University of Singapore, Science Faculty, Computational Sci Dept
 
   
   

Kinetic Data of Bio-molecular Interaction (KDBI) is a collection of experimentally determined kinetic data of protein-protein, protein-RNA, protein-DNA, protein-ligand, RNA-ligand, DNA-ligandbinding or reaction events described in the literature.

Currently, KDBI contains 63 pathway simulation parameter sets, 19,263 records (about 2.3 fold of 8,273 in year 2003) of 10,532 distinctive bio-molecular binding and 11,954 interaction events, which involve 2,635 proteins/protein complexes, 847 nucleic acids, 1603 small molecules and more than 100 pathways.

Field Name

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Molecule 1

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Molecule 2

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Bioevent

Protein List

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Nucleic Acid

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Pathway

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Field Name

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Pathway simulation parameters

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Field Name

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Multi step processes

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Preliminary: Use of KBDI for commercial purposes is not allowed.

Citation:
1. Kumar P, Han BC, Shi Z, Jia J, Wang YP, Zhang YT, Liang L, Liu QF, Ji ZL, Chen YZ. Update of KDBI: Kinetic Data of Bio-molecular Interaction database. Nucleic Acids Res. 2008 Oct 29. [Epub ahead of print] PMID:18971255
2. Z. L. Ji, X. Chen, C. J. Zheng, L.X. Yao, L. Y. Han , W. K. Yeo, P. C. Chung, H. S. Puy, Y. T. Tay, A. Muhammad, and Y. Z. Chen. KDBI:Kinetic Data of Bio-molecular Interactions Database. Nucleic. Acids. Res., 31(1), 255-257. (2003).

Last update: October/10/2008

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Dr. Chen Yuzong
Professor
Dept.Computational Science.NUS.
All rights reserved.
 
   
           
 
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